Table 1 Resources and databases available for P. tepidariorum research
Resource/database | Description | Reference/URL/Accession Identifier |
|---|---|---|
GenBank genome assembly Ptep_3.0 | Latest version, but with no RefSeq | GCA_000365465.3 |
GenBank/RefSeq genome assembly Ptep_2.0 | 16,533 annotated scaffolds | [28] GCF_000365465.2 |
aug3 gene models | Gene prediction with AUGSTUS | [28] https://i5k.nal.usda.gov/Parasteatoda_tepidariorum |
De novo transcriptome assembly | Based on ESTs and NGS reads, mixed sources | [39] |
De novo transcriptome assembly | Based on NGS reads, adult whole body | [40] DDBJ TSA: IAAA01000000 |
De novo transcriptome assemblies | Based on NGS reads, embryos of mixed stages | [38] DDBJ TSA: IACA01000000, IABY00000000 |
Developmental transcriptomes | RNA-Seq for successive stages of embryogenesis | [41] GEO: GSE112712 |
EST clones | 5′ ends of 22,812 clones sequenced | FY216297–FY225483; FY368221–FY381845 |
RefSeq genome assembly (NCBI) | Genome Data Viewer, BLAST | |
Common house spider genome project (BCM-HGSC) | Genomic resources | https://www.hgsc.bcm.edu/arthropods/common-house-spider-genome-project |
Databases of Genome-based Research (BRH) | JBrowse with EST and RNA-Seq data tracks, BLAST, Protocols, Images/movies | |
ASGARD (Extavour Lab) | Search the assemblies of arthropod transcriptomes | [42] |